Package: adehabitatLT 0.3.29

adehabitatLT: Analysis of Animal Movements

A collection of tools for the analysis of animal movements.

Authors:Clement Calenge [aut, cre], Stephane Dray [ctb], Manuela Royer [ctb]

# Install 'adehabitatLT' in R:

install.packages('adehabitatLT', repos = c('https://clementcalenge.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/clementcalenge/adehabitatlt/issues

Datasets:

albatross - Argos Monitoring of Adult Albatross Movement
bear - GPS monitoring of one brown bear
buffalo - GPS monitoring of a buffalo
capreochiz - GPS Monitoring of one Roe Deer in Chize
capreotf - GPS Monitoring of one Roe Deer in Trois-Fontaines
hseal - Argos Monitoring of Hooded Seal
ibex - GPS Monitoring of Four Ibex in the Belledonne Mountain
ibexraw - GPS Monitoring of Four Ibex in the Belledonne Mountain
mouflon - GPS Monitoring of One Mouflon in the Caroux Mountain
porpoise - Argos monitoring of Porpoise Movements
puechcirc - Movements of wild boars tracked at Puechabon
rupicabau - GPS Monitoring of One Chamois in the Bauges Mountains
teal - Teal (Anas crecca) Ring Recovery Dataset
whale - Argos Monitoring of Whale Movement

On CRAN:

8.98 score 6 stars 17 packages 474 scripts 6.7k downloads 72 mentions 94 exports 8 dependencies

Last updated from:d2cb83cd8f. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	142
linux-devel-x86_64	OK	135
source / vignettes	OK	206
linux-release-arm64	OK	138
linux-release-x86_64	OK	152
macos-release-arm64	OK	120
macos-release-x86_64	OK	299
macos-oldrel-arm64	OK	95
macos-oldrel-x86_64	OK	282
windows-devel	OK	101
windows-release	OK	94
windows-oldrel	OK	115
wasm-release	OK	134

Exports:[.ltraj [<-.ltraj acfang.ltraj acfdist.ltraj as.ltraj bestpartmod bindltraj burst burst<-c.ltraj chooseseg cutltraj dchi dl findpath fpt gdltraj hbrown hist.ltraj id id<-indmove indmove.detail infolocs infolocs<-is.regular is.sd lavielle lavielle.default lavielle.ltraj ld ltraj2sldf ltraj2spdf meanfpt mindistkeep modpartltraj na.omit.ltraj NMs.CRW NMs.randomCRW NMs.randomCs NMs.randomShiftRotation NMs2NMm offsetdate partmod.ltraj pchi plot.fipati plot.ltraj plot.partltraj plot.resiti plotltr plotNAltraj print.lavielle print.ltraj print.modpartltraj print.NMm print.NMs print.partltraj print.resiti qchi qqchi qqchi.default qqchi.ltraj qqnorm.ltraj rasterize.ltraj rchi rec redisltraj removeinfo residenceTime runsNAltraj sd2df set.limits setNA sett0 simm.bb simm.brown simm.crw simm.levy simm.mba simm.mou sliwinltr subsample summary.ltraj summaryNAltraj testang.ltraj testdist.ltraj testNM trajdyn typeII2typeI varlogfpt wawotest wawotest.default wawotest.ltraj which.ltraj

Dependencies:ade4 adehabitatMA lattice MASS pixmap Rcpp RcppArmadillo sp

adehabitatLT: Analysis of Animal Movements

Rendered fromadehabitatLT.Rnwusingutils::Sweave

Last update: 2019-03-06
Started: 2015-03-26

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Compute correlogram for angular and linear descriptors of a movement path	acfang.ltraj acfdist.ltraj
Argos Monitoring of Adult Albatross Movement	albatross
Working with Trajectories in 2D Space: the Class ltraj	as.ltraj ltraj print.ltraj rec summary.ltraj
GPS monitoring of one brown bear	bear
GPS monitoring of a buffalo	buffalo
ID, Bursts and infolocs of an Object of Class ltraj	burst burst<- id id<- infolocs infolocs<- removeinfo
Combine Bursts of Relocations in Objects of Class "ltraj"	c.ltraj
GPS Monitoring of one Roe Deer in Chize (France)	capreochiz
GPS Monitoring of one Roe Deer in Trois-Fontaines (France)	capreotf
The Chi Distribution	chi dchi pchi qchi rchi
Split Trajectories into Several Bursts	bindltraj cutltraj
Extract or Replace Parts of an Object of Class ltraj	Extract.ltraj [.ltraj [<-.ltraj
Computation of the First Passage Time From Trajectories	fpt meanfpt plot.fipati varlogfpt
Working with Trajectories: Specify a Time Period	gdltraj
Estimates the value of h for a Brownian motion	hbrown
Histogram of the Descriptive Parameters of a Trajectory	hist.ltraj
Argos Monitoring of Hooded Seal	hseal
GPS Monitoring of Four Ibex in the Belledonne Mountain	ibex
GPS Monitoring of Four Ibex in the Belledonne Mountain (irregular data)	ibexraw
Testing Independence in Regular Trajectory Parameters	indmove indmove.detail testang.ltraj testdist.ltraj
Regular Trajectories	is.regular
Handling of Trajectories of the Same Duration	is.sd sd2df
Segmentation of a time series using the method of Lavielle (1999, 2005)	chooseseg findpath lavielle lavielle.default lavielle.ltraj print.lavielle
Quick Conversion of Objects of Class ltraj from and to Dataframes	dl ld
Conversion of the class "ltraj" to the package "sp"	ltraj2sldf ltraj2spdf
Detecting Absence of Movement in an Object of Class 'ltraj'	mindistkeep
Segmentation of a trajectory based on Markov models	bestpartmod modpartltraj partmod.ltraj plot.partltraj print.modpartltraj print.partltraj
GPS Monitoring of One Mouflon in the Caroux Mountain	mouflon
Removes the missing values in a trajectory	na.omit.ltraj
Date Handling in an Object of Class 'ltraj'	offsetdate
Graphical Display of an Object of Class "ltraj"	plot.ltraj
Changes in Traject Parameters Over Time	plotltr
Argos monitoring of Porpoise Movements	porpoise
Movements of wild boars tracked at Puechabon	puechcirc
Quantile-Quantile Plots for Trajectories of Class 'ltraj'	qqchi qqchi.default qqchi.ltraj qqnorm.ltraj
Rasterize a Trajectory	rasterize.ltraj
Rediscretization of a Trajectory With Regular Step Length or Duration	redisltraj
Trajectory Analysis using the Residence Time Method	plot.resiti print.resiti residenceTime
Highlighting the Patterns in Missing Values in Trajects	plotNAltraj runsNAltraj summaryNAltraj
GPS Monitoring of One Chamois in the Bauges Mountains	rupicabau
Define the Same Time Limits for several Bursts in a Regular Trajectory	set.limits
Place Missing Values in Objects of Class 'ltraj'	setNA
Round the Timing of Collection of Relocations to Obtain Regular Trajectory	sett0
Brownian bridge motion	simm.bb
Simulate a Bivariate Brownian Motion	simm.brown
Simulation of a Correlated Random Walk	simm.crw
Simulates a Levy Walk	simm.levy
Simulation of an Arithmetic Brownian Motion	simm.mba
Simulation of a Bivariate Ornstein-Uhlenbeck Process	simm.mou
Apply a Function on an Object of Class "ltraj", Using a Sliding Window	sliwinltr
Subsample a Trajectory	subsample
Teal (Anas crecca) Ring Recovery Dataset	teal
Null Model Approach for Animal Movement Analysis	NMs.CRW NMs.randomCRW NMs.randomCs NMs.randomShiftRotation NMs2NMm print.NMm print.NMs testNM
Interactive Display of Objects of Class 'ltraj'	trajdyn
Change the Type of a Trajectory	typeII2typeI
Wald-Wolfowitz Test of Randomness	wawotest wawotest.default wawotest.ltraj
Argos Monitoring of Whale Movement	whale
Identify Relocations Fullfilling a Condition in an Object of Class "ltraj"	which.ltraj

Package: adehabitatLT 0.3.29

adehabitatLT: Analysis of Animal Movements

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)