Package: adehabitatLT 0.3.28

adehabitatLT: Analysis of Animal Movements

A collection of tools for the analysis of animal movements.

Authors:Clement Calenge [aut, cre], Stephane Dray [ctb], Manuela Royer [ctb]

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adehabitatLT.pdf |adehabitatLT.html✨
adehabitatLT/json (API)

# Install 'adehabitatLT' in R:
install.packages('adehabitatLT', repos = c('https://clementcalenge.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/clementcalenge/adehabitatlt/issues

Datasets:
  • albatross - Argos Monitoring of Adult Albatross Movement
  • bear - GPS monitoring of one brown bear
  • buffalo - GPS monitoring of a buffalo
  • capreochiz - GPS Monitoring of one Roe Deer in Chize
  • capreotf - GPS Monitoring of one Roe Deer in Trois-Fontaines
  • hseal - Argos Monitoring of Hooded Seal
  • ibex - GPS Monitoring of Four Ibex in the Belledonne Mountain
  • ibexraw - GPS Monitoring of Four Ibex in the Belledonne Mountain
  • mouflon - GPS Monitoring of One Mouflon in the Caroux Mountain
  • porpoise - Argos monitoring of Porpoise Movements
  • puechcirc - Movements of wild boars tracked at Puechabon
  • rupicabau - GPS Monitoring of One Chamois in the Bauges Mountains
  • teal - Teal (Anas crecca) Ring Recovery Dataset
  • whale - Argos Monitoring of Whale Movement

On CRAN:

8.62 score 6 stars 11 packages 364 scripts 5.8k downloads 72 mentions 94 exports 10 dependencies

Last updated 2 months agofrom:c89daeceee. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 05 2024
R-4.5-win-x86_64OKNov 05 2024
R-4.5-linux-x86_64OKNov 05 2024
R-4.4-win-x86_64OKNov 05 2024
R-4.4-mac-x86_64OKNov 05 2024
R-4.4-mac-aarch64OKNov 05 2024
R-4.3-win-x86_64OKNov 05 2024
R-4.3-mac-x86_64OKNov 05 2024
R-4.3-mac-aarch64OKNov 05 2024

Exports:[.ltraj[<-.ltrajacfang.ltrajacfdist.ltrajas.ltrajbestpartmodbindltrajburstburst<-c.ltrajchoosesegcutltrajdchidlfindpathfptgdltrajhbrownhist.ltrajidid<-indmoveindmove.detailinfolocsinfolocs<-is.regularis.sdlaviellelavielle.defaultlavielle.ltrajldltraj2sldfltraj2spdfmeanfptmindistkeepmodpartltrajna.omit.ltrajNMs.CRWNMs.randomCRWNMs.randomCsNMs.randomShiftRotationNMs2NMmoffsetdatepartmod.ltrajpchiplot.fipatiplot.ltrajplot.partltrajplot.resitiplotltrplotNAltrajprint.lavielleprint.ltrajprint.modpartltrajprint.NMmprint.NMsprint.partltrajprint.resitiqchiqqchiqqchi.defaultqqchi.ltrajqqnorm.ltrajrasterize.ltrajrchirecredisltrajremoveinforesidenceTimerunsNAltrajsd2dfset.limitssetNAsett0simm.bbsimm.brownsimm.crwsimm.levysimm.mbasimm.mousliwinltrsubsamplesummary.ltrajsummaryNAltrajtestang.ltrajtestdist.ltrajtestNMtrajdyntypeII2typeIvarlogfptwawotestwawotest.defaultwawotest.ltrajwhich.ltraj

Dependencies:ade4adehabitatMAbootCircStatslatticeMASSpixmapRcppRcppArmadillosp

adehabitatLT: Analysis of Animal Movements

Rendered fromadehabitatLT.Rnwusingutils::Sweaveon Nov 05 2024.

Last update: 2019-03-06
Started: 2015-03-26

Readme and manuals

Help Manual

Help pageTopics
Compute correlogram for angular and linear descriptors of a movement pathacfang.ltraj acfdist.ltraj
Argos Monitoring of Adult Albatross Movementalbatross
Working with Trajectories in 2D Space: the Class ltrajas.ltraj ltraj print.ltraj rec summary.ltraj
GPS monitoring of one brown bearbear
GPS monitoring of a buffalobuffalo
ID, Bursts and infolocs of an Object of Class ltrajburst burst<- id id<- infolocs infolocs<- removeinfo
Combine Bursts of Relocations in Objects of Class "ltraj"c.ltraj
GPS Monitoring of one Roe Deer in Chize (France)capreochiz
GPS Monitoring of one Roe Deer in Trois-Fontaines (France)capreotf
The Chi Distributionchi dchi pchi qchi rchi
Split Trajectories into Several Burstsbindltraj cutltraj
Extract or Replace Parts of an Object of Class ltrajExtract.ltraj [.ltraj [<-.ltraj
Computation of the First Passage Time From Trajectoriesfpt meanfpt plot.fipati varlogfpt
Working with Trajectories: Specify a Time Periodgdltraj
Estimates the value of h for a Brownian motionhbrown
Histogram of the Descriptive Parameters of a Trajectoryhist.ltraj
Argos Monitoring of Hooded Sealhseal
GPS Monitoring of Four Ibex in the Belledonne Mountainibex
GPS Monitoring of Four Ibex in the Belledonne Mountain (irregular data)ibexraw
Testing Independence in Regular Trajectory Parametersindmove indmove.detail testang.ltraj testdist.ltraj
Regular Trajectoriesis.regular
Handling of Trajectories of the Same Durationis.sd sd2df
Segmentation of a time series using the method of Lavielle (1999, 2005)chooseseg findpath lavielle lavielle.default lavielle.ltraj print.lavielle
Quick Conversion of Objects of Class ltraj from and to Dataframesdl ld
Conversion of the class "ltraj" to the package "sp"ltraj2sldf ltraj2spdf
Detecting Absence of Movement in an Object of Class 'ltraj'mindistkeep
Segmentation of a trajectory based on Markov modelsbestpartmod modpartltraj partmod.ltraj plot.partltraj print.modpartltraj print.partltraj
GPS Monitoring of One Mouflon in the Caroux Mountainmouflon
Removes the missing values in a trajectoryna.omit.ltraj
Date Handling in an Object of Class 'ltraj'offsetdate
Graphical Display of an Object of Class "ltraj"plot.ltraj
Changes in Traject Parameters Over Timeplotltr
Argos monitoring of Porpoise Movementsporpoise
Movements of wild boars tracked at Puechabonpuechcirc
Quantile-Quantile Plots for Trajectories of Class 'ltraj'qqchi qqchi.default qqchi.ltraj qqnorm.ltraj
Rasterize a Trajectoryrasterize.ltraj
Rediscretization of a Trajectory With Regular Step Length or Durationredisltraj
Trajectory Analysis using the Residence Time Methodplot.resiti print.resiti residenceTime
Highlighting the Patterns in Missing Values in TrajectsplotNAltraj runsNAltraj summaryNAltraj
GPS Monitoring of One Chamois in the Bauges Mountainsrupicabau
Define the Same Time Limits for several Bursts in a Regular Trajectoryset.limits
Place Missing Values in Objects of Class 'ltraj'setNA
Round the Timing of Collection of Relocations to Obtain Regular Trajectorysett0
Brownian bridge motionsimm.bb
Simulate a Bivariate Brownian Motionsimm.brown
Simulation of a Correlated Random Walksimm.crw
Simulates a Levy Walksimm.levy
Simulation of an Arithmetic Brownian Motionsimm.mba
Simulation of a Bivariate Ornstein-Uhlenbeck Processsimm.mou
Apply a Function on an Object of Class "ltraj", Using a Sliding Windowsliwinltr
Subsample a Trajectorysubsample
Teal (Anas crecca) Ring Recovery Datasetteal
Null Model Approach for Animal Movement AnalysisNMs.CRW NMs.randomCRW NMs.randomCs NMs.randomShiftRotation NMs2NMm print.NMm print.NMs testNM
Interactive Display of Objects of Class 'ltraj'trajdyn
Change the Type of a TrajectorytypeII2typeI
Wald-Wolfowitz Test of Randomnesswawotest wawotest.default wawotest.ltraj
Argos Monitoring of Whale Movementwhale
Identify Relocations Fullfilling a Condition in an Object of Class "ltraj"which.ltraj